STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpaB2Probable flp pilus assembly cpab; signal peptide protein. (208 aa)    
Predicted Functional Partners:
cpaE2
Probable pilus assembly protein.
 
  
 0.976
RSp1088
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
      0.974
cpaC2
Probable pilus assembly, secretin cpac signal peptide protein; Belongs to the bacterial secretin family.
 
  
 0.972
tadB2
Probable pilus assembly tadb transmembrane protein.
 
  
 0.971
tadC2
Probable pilus assembly tadc transmembrane protein.
 
  
 0.966
tadD2
Probable pilus assembly tadd transmembrane protein.
 
  
 0.952
cpaF2
Probable secretion atpase protein.
 
  
 0.950
tadG2
Putative cog4961, flp pilus assembly transmembrane protein.
 
  
 0.939
cpaA2
Probable prepilin peptidase transmembrane protein.
 
  
 0.899
RSp1080
Probable transmembrane protein.
 
  
 0.898
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.