STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
cpaA2Probable prepilin peptidase transmembrane protein. (168 aa)    
Predicted Functional Partners:
tadG2
Putative cog4961, flp pilus assembly transmembrane protein.
  
 0.958
RSp1092
Putative pilin protein.
 
  
 0.923
cpaB2
Probable flp pilus assembly cpab; signal peptide protein.
 
  
 0.905
tadB2
Probable pilus assembly tadb transmembrane protein.
 
  
 0.900
cpaE2
Probable pilus assembly protein.
 
  
 0.880
cpaC2
Probable pilus assembly, secretin cpac signal peptide protein; Belongs to the bacterial secretin family.
 
  
 0.876
tadC2
Probable pilus assembly tadc transmembrane protein.
 
     0.799
cpaB1
Probable pilus assembly cpab transmembrane protein.
 
  
 0.787
cpaC1
Probable pilus assembly protein, secretin cpac; Belongs to the bacterial secretin family.
 
  
 0.754
tadD2
Probable pilus assembly tadd transmembrane protein.
 
   
 0.742
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.