STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1092Putative pilin protein. (58 aa)    
Predicted Functional Partners:
cpaA2
Probable prepilin peptidase transmembrane protein.
 
  
 0.923
RSc0658
Putative pilin transmembrane protein.
     
  0.900
RSc0660
Putative pilin transmembrane protein.
     
  0.900
RSc0661
Putative pilin transmembrane protein.
     
  0.900
cpaE2
Probable pilus assembly protein.
 
  
 0.814
tadG2
Putative cog4961, flp pilus assembly transmembrane protein.
 
    0.779
tadB2
Probable pilus assembly tadb transmembrane protein.
 
  
 0.778
cpaC2
Probable pilus assembly, secretin cpac signal peptide protein; Belongs to the bacterial secretin family.
 
  
 0.762
cpaB2
Probable flp pilus assembly cpab; signal peptide protein.
 
  
 0.749
tadC2
Probable pilus assembly tadc transmembrane protein.
 
  
 0.742
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.