STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1096Putative transcription regulator protein. (380 aa)    
Predicted Functional Partners:
RSp1095
Probable activation/secretion signal peptide protein.
     0.854
RSp0611
Probable transmembrane protein.
  
     0.667
RSc2677
Putative type 4 fimbrial biogenesis pilw-related protein transmembrane.
  
     0.661
repA
Probable repa replicase protein.
  
     0.652
RSc2655
Probable transmembrane protein.
  
     0.646
RSc2678
Probable type 4 fimbrial biogenesis pilv-related transmembrane protein.
  
     0.624
RSc2675
Putative type 4 fimbrial biogenesis pily1-related protein signal peptide.
  
     0.608
RSp1097
Probable signal transduction eal-ggdef domains transmembrane protein.
    
 0.603
addB
Probable homologous recombinational repair protein.
  
     0.599
RSc0055
Signal peptide protein; Putative dienelactone hydrolase and related enzymes / esterase/lipase/thioesterase;lipase, active site; signal peptide protein.
 
     0.593
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.