STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp1100Putative possible signal sensing transmembrane protein. (478 aa)    
Predicted Functional Partners:
RSp1178
Probable composite two-component transcriptional regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein.
 
 0.740
RSc3079
Probable composite two component regulatory (sensor histidine kinase and response regulator hybrid) transcription regulator protein.
 
 0.717
RSp1676
Probable composite two-component regulatory (sensor kinase and response regulator hybrid) transcription regulator protein.
 
 0.687
rcsC
Probable capsular synthesis regulatory (two-component sensor kinase and response regulator hybrid) transcription regulator protein.
 
 
 0.661
galE
Probable udp-glucose 4-epimerase protein; Belongs to the NAD(P)-dependent epimerase/dehydratase family.
   
   0.637
RSp0254
Probable signal transduction eal-ggdef domains transmembrane protein.
 
 
 0.608
RSp1099
Putative methyl-accepting chemotaxis transducer transmembrane protein.
 
 
 
 0.607
RSp0012
Probable signal transduction ggdef domain transmembrane protein.
 
 
 
 0.555
RSc0588
Probable signal transduction protein eal-ggdef domains.
 
 
 
 0.548
RSp1155
Probable signal transduction protein eal-ggdef domains.
 
 
 
 0.528
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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