Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RSp1123Probable kog1208, dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) oxidoreductase protein. (306 aa)    
Predicted Functional Partners:
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.749
RSp1422
Putative peptide synthetase protein.
  
 
 0.613
RSc3201
Probable pseudogene (dehydrogenase, fragment) protein.
  
     0.577
RSp1121
Putative transcription regulator protein.
 
     0.570
RSp1122
Putative zn-dependent hydrolase of the beta-lactamase fold protein.
       0.551
RSc1770
Putative hydrolase /ayltransferase (alpha/beta hydrolase superfamily) protein.
  
  0.515
RSp0709
Putative cytochrome p-450-like monooxygenase oxidoreductase protein; Belongs to the cytochrome P450 family.
  
 
 0.441
RSc2042
Putative maoc-like dehydratase; protein.
 
 0.402
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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