STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1140Probable substrate-binding periplasmic (pbp) abc transporter protein. (298 aa)    
Predicted Functional Partners:
gltJ
Probable glutamate/aspartate transmembrane abc transporter protein.
   0.838
gltK
Probable glutamate/aspartate transmembrane abc transporter protein.
 
 
 0.818
gltL
Putative glutamate/aspartate transport atp-binding abc transporter protein.
 
 
 0.803
RSc2258
Probable amino acid transmembrane abc transporter protein.
   0.712
RSp0428
Putative pseudogene protein.
 
 
 0.594
RSc2259
Probable amino acid transmembrane abc transporter protein.
 
 
 0.593
RSp0934
Probable amino acid transmembrane abc transporter protein.
   0.581
RSc2260
Probable amino-acid atp-binding abc transporter protein.
 
 
 0.571
RSp0933
Probable amino acid transmembrane abc transporter protein.
 
 
 0.563
RSp0932
Probable amino-acid atp-binding abc transporter protein.
 
 
 0.542
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.