STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsdProbable d-serine deaminase (d-serine dehydratase) protein. (425 aa)    
Predicted Functional Partners:
ndeD
Probable n-acyl-d-glutamate deacylase protein.
 
   
 0.910
ilvA
Probable threonine amonia-lyase (threonine dehydratase, threonine deaminase) transmembrane protein; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the s [...]
    
 0.903
RSc0948
Putative amino-acid dehydratase protein.
    
 0.903
sda2b
Probable inactivated l-serine amonya-lyase, l-serine dehydratase 2 (l-serine deaminase 2) protein.
   
 
  0.900
sdaA2
Probable l-serine amonya-lyase, l-serine dehydratase 2 (l-serine deaminase) protein; Belongs to the iron-sulfur dependent L-serine dehydratase family.
   
 
  0.900
sdaA1
Probable l-serine dehydratase (l-serine deaminase) protein; Belongs to the iron-sulfur dependent L-serine dehydratase family.
   
 
  0.900
RSp1186
Probable transcription regulator protein.
 
     0.843
RSp1188
Miscellaneous; hypothetical/partial homology.
 
   
 0.815
gloA
Probable lactoylglutathione lyase (methylglyoxalase) protein.
   
 
  0.805
RSc1034
Hypothetical oxidoreductase protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
 0.802
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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