STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
edaProbable bifunctional alkh protein (khg/kdpg aldolase): 4-hydroxy-2-oxoglutarate aldolase and 2-dehydro-3-deoxyphosphogluconate aldolase. (208 aa)    
Predicted Functional Partners:
edd
Probable phosphogluconate dehydratase oxidoreductase protein; Catalyzes the dehydration of 6-phospho-D-gluconate to 2- dehydro-3-deoxy-6-phospho-D-gluconate; Belongs to the IlvD/Edd family.
 
 0.999
RSp1184
Putative fructokinase-like protein (sugar kinase).
 
 0.982
glk
Probable glucokinase (glucose kinase) protein; Belongs to the bacterial glucokinase family.
 
 
 0.962
aceA
Probable isocitrate lyase protein.
     
 0.909
glcD
Probable glycolate oxidase (fad-linked subunit) oxidoreductase protein.
   
 
 0.907
glcF
Probable glycolate oxidase (iron-sulfur subunit) protein.
     
 0.907
glcE
Probable glycolate oxidase subunit oxidoreductase protein.
   
 
 0.906
RSc0262
Probable d-isomer specific 2-hydroxyacid dehydrogenase, nad-binding; oxidoreductase protein.
    
 0.905
aceB
Probable malate synthase a (msa or masy protein); Belongs to the malate synthase family.
     
 0.904
gcl
Probable glyoxylate carboligase protein; Belongs to the TPP enzyme family.
     
 0.903
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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