STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pagLProbable lipid a deacylase signal peptide protein; Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety; Belongs to the PagL family. (187 aa)    
Predicted Functional Partners:
kdtA
Probable 3-deoxy-d-manno-octulosonic-acid transferase transmembrane protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
  0.902
lpxK
Probable tetraacyldisaccharide 4'-kinase (lipid a 4'-kinase) protein; Transfers the gamma-phosphate of ATP to the 4'-position of a tetraacyldisaccharide 1-phosphate intermediate (termed DS-1-P) to form tetraacyldisaccharide 1,4'-bis-phosphate (lipid IVA).
     
 0.901
RSc1413
Probable outer membrane chaperone, skp-related transmembrane protein; Belongs to the skp family.
    
 
 0.744
lolB
Probable outer-membrane lipoprotein lolb precursor; Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein.
 
  
 0.666
RSc0752
Probable transmembrane protein.
  
    0.634
parB
Putative partitioning protein; Belongs to the ParB family.
  
     0.595
RSp0660
Probable porin protein.
  
 
 0.586
tadG2
Putative cog4961, flp pilus assembly transmembrane protein.
  
     0.577
RSc3091
Probable outer membrane porin signal peptide protein.
  
 
 0.569
RSp1399
Probable porin signal peptide protein.
  
 
 0.557
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.