STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1202Putative o-antigen polymerase transmembrane protein. (390 aa)    
Predicted Functional Partners:
epsD
Ndp-n-acetyl-d-galactosaminuronic acid dehydrogenase. oxidoreductase protein; Probably involved in the synthesis of sugar components of EPS I, by converting NDP-N-acetyl-D-galactosamine into NDP-N-acetyl-D- galactosaminuronic acid.
  
  
 0.769
epsC2
Probable udp-n-acetylglucosamine 2-epimerase protein; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.546
epsC
Udp-n-acetylglucosamine 2-epimerase (udp-glcnac-2-epimerase) protein; May be involved in synthesis of N-acetyltrideoxygalactose, a component of exopolysaccharide EPS I which functions as a virulence factor; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
  
  
 0.546
wecA
Probable undecaprenyl phosphate n-acetylglucosaminyltransferase transmembrane protein.
  
  
 0.494
mraY
Phospho-N-acetylmuramoyl-pentapeptide-transferase; First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; Belongs to the glycosyltransferase 4 family. MraY subfamily.
  
  
 0.494
RSc0686
Putative lipopolysaccharide o-side chain biosynthesis transmembrane protein.
  
  
 0.420
epsE
epsIpolysaccharide export inner membrane epse. transmembrane protein; Probably involved in polymerization and/or export of exopolysaccharide EPS I which functions as a virulence factor. May play a role in export of EPS I or its intermediates across the membranes (By similarity); To E.coli bicyclomycin resistance protein (BCR).
  
  
 0.420
rfbC
Probable dtdp-4-dehydrorhamnose 3,5-epimerase protein; Catalyzes the epimerization of the C3' and C5'positions of dTDP-6-deoxy-D-xylo-4-hexulose, forming dTDP-6-deoxy-L-lyxo-4-hexulose. Belongs to the dTDP-4-dehydrorhamnose 3,5-epimerase family.
  
  
 0.414
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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