STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1213Probable na+-driven multidrug efflux pump transmembrane protein. (455 aa)    
Predicted Functional Partners:
RSp1214
Probable cog3644, uncharacterized protein conserved in bacteria.
 
     0.823
RSp1215
Probable pseudogene (truncated type III effector protein with ankyrin repeats).
   
 
 0.534
gapA
Probable glyceraldehyde-3-phosphate dehydrogenase (gapdh). oxidoreductase protein; Catalyzes the oxidative phosphorylation of glyceraldehyde 3- phosphate (G3P) to 1,3-bisphosphoglycerate (BPG) using the cofactor NAD. The first reaction step involves the formation of a hemiacetal intermediate between G3P and a cysteine residue, and this hemiacetal intermediate is then oxidized to a thioester, with concomitant reduction of NAD to NADH. The reduced NADH is then exchanged with the second NAD, and the thioester is attacked by a nucleophilic inorganic phosphate to produce BPG.
   
  
 0.533
rpsA
Probable 30s ribosomal subunit protein s1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence.
  
    0.518
crtB
Putative phytoene synthase protein.
   
  
 0.503
RSp0404
Probable transmembrane protein.
   
  
 0.503
RSc1180
Putative multidrug efflux pump transmembrane protein.
  
  
 0.498
RSp1212
Putative type III effector protein.
       0.482
RSp0641
Probable non ribosomal peptide synthetase protein.
  
  
 0.430
RSc1765
Probable 6-aminohexanoate-dimer hydrolase lipoprotein.
  
   
 0.410
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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