STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1215Probable pseudogene (truncated type III effector protein with ankyrin repeats). (599 aa)    
Predicted Functional Partners:
RSc1810
Probable polyketide synthase protein.
  
 0.788
apaH
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
   
 0.777
RSp0216
Putative type III effector protein (serine/threonine-protein kinase).
  
 
 0.763
RSp0097
Probable ankyrin-repeat harboring protein.
  
     0.723
RSc3104
Probable calcium-binding signal peptide protein.
    
 0.701
RSc0835
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
 0.670
RSc3235
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
 0.670
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 0.660
hrpA
Probable atp-dependent rna helicase protein.
    
 0.655
RSc1806
Probable polyketide synthase protein.
  
 0.631
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.