STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1228Putative signal peptide protein. (346 aa)    
Predicted Functional Partners:
RSp0641
Probable non ribosomal peptide synthetase protein.
 
 
 0.772
RSc1806
Probable polyketide synthase protein.
 
 
 0.612
cbhA
Probable exoglucanase a (1,4-beta-cellobiosidase) protein; Belongs to the glycosyl hydrolase family 6.
  
     0.546
RSc0079
Probable transmembrane protein.
    
   0.501
RSp1229
Probable alpha/beta hydrolase; protein.
  
   0.491
RSp0709
Putative cytochrome p-450-like monooxygenase oxidoreductase protein; Belongs to the cytochrome P450 family.
  
 0.485
rplF
Probable 50s ribosomal subunit protein l6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.470
plcN
Probable non-hemolytic phospholipase c (phosphatidylcholine cholinephosphohydrolase) signal peptide protein.
 
     0.464
RSc1810
Probable polyketide synthase protein.
 
 
 
 0.448
RSp1309
Probable transmembrane protein.
  
     0.443
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.