STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1229Probable alpha/beta hydrolase; protein. (272 aa)    
Predicted Functional Partners:
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.692
RSp1234
Probable cog0684, demethylmenaquinone methyltransferase protein.
  
     0.577
RSc1810
Probable polyketide synthase protein.
 
 
 0.546
efe
2-oxoglutarate-dependent ethylene/succinate-forming enzyme (ethylene-forming enzyme) (efe) protein; Simultaneously catalyzes two reactions, namely formation of ethylene and of succinate from 2-oxoglutarate.
  
   
 0.530
RSc1806
Probable polyketide synthase protein.
 
 
 0.509
RSp1228
Putative signal peptide protein.
   
   0.492
RSp1148
Putative predicted hydrolases or acyltransferase (alpha/beta hydrolase superfamily) signal peptide protein.
  
     0.466
apaH
Bis(5'-nucleosyl)-tetraphosphatase, symmetrical; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
    
  0.452
RSc1804
Putative peptide synthase with thioesterase and phosphopantetheinyl transferase domains protein; Belongs to the P-Pant transferase superfamily.
 
   
 0.414
RSp0270
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
 
 
 0.408
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.