STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1229Probable alpha/beta hydrolase; protein. (272 aa)    
Predicted Functional Partners:
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.671
RSp1234
Probable cog0684, demethylmenaquinone methyltransferase protein.
  
     0.577
RSc1810
Probable polyketide synthase protein.
 
 0.550
RSc1806
Probable polyketide synthase protein.
 
 0.528
efe
2-oxoglutarate-dependent ethylene/succinate-forming enzyme (ethylene-forming enzyme) (efe) protein; Simultaneously catalyzes two reactions, namely formation of ethylene and of succinate from 2-oxoglutarate.
  
   
 0.524
RSp1228
Putative signal peptide protein.
  
   0.491
RSp1148
Putative predicted hydrolases or acyltransferase (alpha/beta hydrolase superfamily) signal peptide protein.
  
     0.466
RSp1431
Putative glycine/d-amino acid oxidases (deaminating) oxidoreductase protein.
  
 
  0.409
RSp0270
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
 
 
 0.405
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.