STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1231Putative dimethylmenaquinone methyltransferase; protein. (216 aa)    
Predicted Functional Partners:
ilvG
Putative acetolactate synthase isozyme II (large subunit) protein; Belongs to the TPP enzyme family.
     
  0.900
ilvH
Probable acetolactate synthase isozyme III (small subunit) protein.
     
  0.900
ilvI
Probable acetolactate synthase isozyme III (large subunit) protein.
     
  0.900
rraA
Probable regulator of ribonuclease activity a protein; Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions (By similarity).
  
   
 0.770
RSp1234
Probable cog0684, demethylmenaquinone methyltransferase protein.
 
    
0.686
RSp1233
Putative dimethylmenaquinone methyltransferase; protein.
 
    
0.683
RSp0233
Probable hydrolase transmembrane protein.
 
   
 0.624
aatA1
Probable aspartate aminotransferase a protein.
       0.568
RSp1230
Putative dioxygenase oxidoreductase protein.
     
 0.524
RSp1235
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
       0.421
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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