STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1233Putative dimethylmenaquinone methyltransferase; protein. (221 aa)    
Predicted Functional Partners:
ttuC2
Probable tartrate dehydrogenase oxidoreductase protein.
     0.886
leuB1
3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. Belongs to the isocitrate and isopropylmalate dehydrogenases family. LeuB type 1 subfamily.
      0.865
RSp1234
Probable cog0684, demethylmenaquinone methyltransferase protein.
 
    
0.830
ttuC
Probable tartrate dehydrogenase oxidoreductase protein.
      0.816
aatA1
Probable aspartate aminotransferase a protein.
 
     0.807
RSp1235
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
 
     0.691
RSp1231
Putative dimethylmenaquinone methyltransferase; protein.
 
    
0.683
RSp1230
Putative dioxygenase oxidoreductase protein.
     
 0.409
RSp0233
Probable hydrolase transmembrane protein.
 
   
 0.403
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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