STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp1234Probable cog0684, demethylmenaquinone methyltransferase protein. (233 aa)    
Predicted Functional Partners:
RSp1233
Putative dimethylmenaquinone methyltransferase; protein.
 
    
0.831
aatA1
Probable aspartate aminotransferase a protein.
 
     0.805
RSp0944
Probable transferase protein.
  
     0.769
RSp1235
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
 
     0.737
RSp1231
Putative dimethylmenaquinone methyltransferase; protein.
 
    
0.686
RSp1229
Probable alpha/beta hydrolase; protein.
  
     0.577
ttuC
Probable tartrate dehydrogenase oxidoreductase protein.
     0.427
RSp1230
Putative dioxygenase oxidoreductase protein.
     
 0.409
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.