STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1247Probable transcription regulator protein. (310 aa)    
Predicted Functional Partners:
RSp1248
Putative dienelactone hydrolase oxidoreductase protein.
       0.781
RSp1246
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
    0.775
RSc0234
Probable transcription regulator protein.
  
     0.717
RSc1108
Probable transcriptional regulatory dna-binding transcription regulator protein.
 
 
 0.567
phoB
Probable phosphate regulon two-component response regulator transcription regulator protein.
   
  
 0.540
prhR
3-compartiment signal transduction system, component prhr transmembrane protein.
      
 0.524
RSp0641
Probable non ribosomal peptide synthetase protein.
 
   
 0.487
prhJ
Transcription regulator prhj transcription regulator protein.
   
  
 0.476
RSp0068
Probable transcriptional regulator transcription regulator protein.
 
 
 0.472
RSp1245
Putative arylesterase protein.
  
    0.458
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.