STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1253Putative hipa protein related(fragment). (274 aa)    
Predicted Functional Partners:
RSp1254
Hypothetical hipa protein related(fragment).
     0.991
hipB
Putative transcription regulator protein.
  
  
 0.821
RSc2508
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.591
RSc2621
Hypothetical protein of unknown function duf1016.
  
     0.546
RSp1251
Probable signal peptide protein.
       0.499
RSp1255
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.476
RSc3225
Hypothetical protein of unknown function upf0156.
  
     0.427
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.