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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1278Probable transporter transmembrane protein; Belongs to the major facilitator superfamily. (476 aa)    
Predicted Functional Partners:
emrA
Probable multidrug resistance a (translocase) transmembrane protein.
 
 0.716
RSc2324
Putative transport transmembrane protein.
  
     0.697
RSp0440
Putative multidrug resistance homolog transmembrane protein.
 
 0.688
RSc2726
Probable multidrug resistance transport transmembrane protein.
 
 0.683
RSp0441
Probable inner membrane multidrug resistance transmembrane protein.
  
     0.676
RSc1853
Probable multidrug resistance transmembrane protein.
 
 0.650
fumC
Probable fumarate hydratase class II (fumarase c) protein; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
       0.479
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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