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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1298Putative abc-type branched-chain amino acid transport system abc transporter protein. (391 aa)    
Predicted Functional Partners:
RSc2247
Probable transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.842
RSc3340
Probable transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.841
livM
Probable amino acid transport system permease lipoprotein transmembrane; Belongs to the binding-protein-dependent transport system permease family.
 
    0.837
RSc3341
Probable transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.837
livH1
Putative amino acid transmembrane transmembrane protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.833
RSc2248
Probable transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.831
RSp0015
Probable amino-acid transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.828
RSp0014
Probable amino-acid transmembrane lipoprotein abc transporter; Belongs to the binding-protein-dependent transport system permease family.
 
    0.821
livG
Probable amino-acid atp-binding abc transporter protein.
 
  
 0.814
livH2
Putative amino-acid transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.803
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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