STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp1314Putative zn-dependent hydrolase protein. (335 aa)    
Predicted Functional Partners:
RSp0702
Putative 2-polyprenyl-6-methoxyphenol hydroxylase and related fad-dependent oxidoreductases oxidoreductase protein.
    0.858
RSp0701
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.792
RSp1315
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
    0.783
RSp1316
Probable 4-hydroxyphenylpyruvate dioxygenase oxidoreductase protein.
 
   
 0.701
RSp0641
Probable non ribosomal peptide synthetase protein.
   
 
 0.526
RSp0613
Probable transcription regulator protein.
  
     0.473
RSp1317
Probable transcription regulator protein.
       0.471
RSc0300
Probable transcription regulator protein.
 
     0.442
gstB
Probable glutathione s-transferase protein.
 
 
   0.432
RSp1313
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.429
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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