STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1367Putative cytochrome c5 protein. (135 aa)    
Predicted Functional Partners:
abpE
Probable thiamine biosynthesis apbe transmembrane protein; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein. Belongs to the ApbE family.
       0.773
petC
Putative cytochrome c1 precursor transmembrane protein.
 
  
 0.768
RSc2987
Probable oxidoreductase cytochrome c-type signal peptide protein.
 
   
 0.736
RSc1279
Probable cytochrome c oxidase (subunit III) transmembrane protein; C-type cytochrome. Part of the cbb3-type cytochrome c oxidase complex.
  
 0.670
nosR
Probable transmembrane regulatory nosr transcription regulator protein.
 
     0.634
RSc0197
Putative cytochrome c signal peptide protein.
 
   
 0.602
nosZ
Probable nitrous-oxide reductase precursor (n(2)or) (n2oreductase). oxidoreductase protein; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; Belongs to the NosZ family.
 
     0.585
copA
Probable copper resistance transmembrane protein.
    
   0.550
RSp1530
Polyphenol oxidase (laccase) oxidoreductase protein.
    
   0.550
ctaA
Putative heme o oxygenase (cytochrome aa3-controlling) transmembrane protein.
 
     0.531
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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