STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1399Probable porin signal peptide protein. (347 aa)    
Predicted Functional Partners:
RSp1400
Probable 4-hydroxyphenylpyruvate dioxygenase-related protein.
       0.746
RSc0067
Putative thioredoxin protein.
  
     0.745
phaP1
Probable polyhydroxybutyrate granule-associated protein (phasin) phap1.
  
     0.732
RSc1181
Probable cog1807, 4-amino-4-deoxy-l-arabinose transferase and related glycosyltransferases of pmt family transmembrane protein.
  
     0.718
RSc0709
Putative transglycosylase transmembrane protein.
  
     0.703
RSp1283
Putative lamb type porin transmembrane protein.
  
  
 0.698
RSc2760
Probable ipr001702 outer membrane (porin) signal peptide protein.
  
  
 
0.664
RSc2108
Probable porin signal peptide protein.
  
  
 
0.663
RSp0337
Probable porin precursor transmembrane protein.
  
  
 
0.659
RSc1082
Probable outer membrane porin protein.
  
  
 
0.657
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.