STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp1400Probable 4-hydroxyphenylpyruvate dioxygenase-related protein. (626 aa)    
Predicted Functional Partners:
aroE2
Probable shikimate 5-dehydrogenase oxidoreductase protein; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
 
 
 0.991
aroQ2
Probable 3-dehydroquinate dehydratase 2 (3-dehydroquinase 2)(type II dhqase 2) protein; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
    
 0.951
aroE1
Probable shikimate 5-dehydrogenase oxidoreductase protein; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
 
 0.935
aroQ1
Putative 3-dehydroquinate dehydratase 1 (3-dehydroquinase 1)(type II dhqase 1) protein; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family.
    
 0.928
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
 
 
 0.926
RSp1399
Probable porin signal peptide protein.
       0.746
pcaG
Probable protocatechuate 3,4-dioxygenase (alpha chain) oxidoreductase protein.
 
   
 0.735
pobB
Probable 4-hydroxybenzoate 3-monooxygenase oxidoreductase protein.
 
  
 0.723
pcaH
Probable protocatechuate 3,4-dioxygenase (beta chain) oxidoreductase protein.
 
   
 0.722
RSp1395
Putative transcription regulator transcription regulator protein.
  
     0.718
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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