STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1423Putative dehydrogenase (flavoprotein) oxidoreductase. (435 aa)    
Predicted Functional Partners:
RSp1422
Putative peptide synthetase protein.
     
 0.795
RSp1424
Probable aminobutyrate--pyruvate aminotransferase protein; Catalyzes reversively the conversion of L-aspartate beta- semialdehyde (ASA) to L-2,4-diaminobutyrate (DABA) by transamination with L-glutamate; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.779
etf
Probable electron transfer flavoprotein-ubiquinone oxidoreductase; Accepts electrons from ETF and reduces ubiquinone.
  
 
 0.603
RSp0625
Probable magnesium chelatase (subunits dI protein.
  
  
 0.561
RSp0641
Probable non ribosomal peptide synthetase protein.
  
  
 0.552
RSp1425
Probable oxidoreductase oxidoreductase protein.
       0.543
etfB
Probable electron transfer flavoprotein (beta-subunit).
  
 
 0.534
eftB
Putative electron transfer flavoprotein beta-subunit.
  
 
 0.534
RSc0431
Probable cog4261 : predicted acyltransferase protein.
 
   
 0.523
RSp1428
Probable thiosulfate sulfurtransferase; protein.
 
     0.515
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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