STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp1425Probable oxidoreductase oxidoreductase protein. (445 aa)    
Predicted Functional Partners:
RSp1422
Putative peptide synthetase protein.
 
 
 0.961
RSp0641
Probable non ribosomal peptide synthetase protein.
 
 
 0.890
RSp0165
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
  
 0.866
RSp0640
Probable decoration of polyketide or non ribosomal peptide protein.
 
  
 0.865
RSc1806
Probable polyketide synthase protein.
 
 
 0.817
RSp0422
Probable siderophore synthetase component protein.
 
  
 0.781
RSc1811
Putative siderophore synthetase protein.
 
 
 0.769
RSp1424
Probable aminobutyrate--pyruvate aminotransferase protein; Catalyzes reversively the conversion of L-aspartate beta- semialdehyde (ASA) to L-2,4-diaminobutyrate (DABA) by transamination with L-glutamate; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
  
 0.761
RSc1804
Putative peptide synthase with thioesterase and phosphopantetheinyl transferase domains protein; Belongs to the P-Pant transferase superfamily.
 
  
 0.747
RSp0638
Probable cyclic peptide transporter; abc transporter protein.
 
  
 0.739
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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