STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1434Putative acyl-coa synthetases(amp-forming) protein. (551 aa)    
Predicted Functional Partners:
RSc1810
Probable polyketide synthase protein.
 0.989
RSp0641
Probable non ribosomal peptide synthetase protein.
 
0.968
RSp1419
Putative peptide synthase protein.
  
0.934
fadD2
Probable long-chain-fatty-acid--coa ligase protein.
 
    
0.927
RSp0787
Putative amp-dependent synthetase and ligase transmembrane protein.
 
    
0.927
fadD1
Probable long-chain-fatty-acid--coa ligase protein.
 
    
0.912
fabF1
Probable 3-oxoacyl-[acyl-carrier-protein] synthase II; Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP.
 
  
 0.906
RSc2753
Probable ipr002198 short-chain dehydrogenase/reductase oxidoreductase protein.
 
  
   0.905
RSc0730
Probable oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.904
RSp0935
Probable oxidoreductase protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
 0.904
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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