STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1462Putative outer membrane efflux protein. (537 aa)    
Predicted Functional Partners:
RSp1463
Putative abc transporter related protein.
 
   0.891
RSp1465
Probable abc-type transport system, permease component abc transporter protein.
 
 
 0.868
RSp1464
Probable abc-type transport system, atpase component abc transporter protein.
   
 
 0.807
RSp1461
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.563
RSp1197
Putative membrane fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   0.526
RSp0927
Putative cation efflux system transmembrane protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
 
 0.479
RSc0163
Putative secretion protein hlyd-related protein.
 
   0.459
RSp1199
Probable drug efflux transmembrane protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.424
RSp1198
Probable drug efflux pump transmembrane protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
   0.412
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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