STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1463Putative abc transporter related protein. (452 aa)    
Predicted Functional Partners:
RSp1465
Probable abc-type transport system, permease component abc transporter protein.
 
  
 0.967
RSp1462
Putative outer membrane efflux protein.
 
   0.890
RSp1464
Probable abc-type transport system, atpase component abc transporter protein.
 
  
 0.845
RSp1457
Putative cation-efflux system signal peptide protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   
 0.582
RSp1041
Probable cation transporter transmembrane protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   
 0.577
RSp1461
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
       0.555
RSp0292
Probable typeIsecretion system, atp-binding transmembrane abc transporter protein.
  
 
 0.481
RSp1182
Putative typeIsecretion system, atp-binding transmembrane abc transporter protein.
  
 
 0.481
RSc1653
Putative transport/efflux transmembrane protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
   
 0.475
RSc2726
Probable multidrug resistance transport transmembrane protein.
 
     0.452
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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