STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1473Putative oxidoreductase (related to aryl-alcohol dehydrogenases) oxidoreductase protein. (334 aa)    
Predicted Functional Partners:
RSc1154
Putative aldo/keto reductase; oxidoreductase protein.
 
 
 0.722
RSc1500
Putative aldo/keto reductase; oxidoreductase protein.
 
 
 0.672
RSp1472
Probable 4-carboxymuconolactone decarboxylase protein.
       0.601
RSp0641
Probable non ribosomal peptide synthetase protein.
   
 0.572
RSp1127
Probable transmembrane abc transporter protein; Belongs to the MIP/aquaporin (TC 1.A.8) family.
    
 
 0.499
RSc0919
Putative deacetylase protein.
   
  0.434
RSc1606
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
   
  0.434
RSc1961
Putative aaa atpase; protein.
    
 
 0.410
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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