STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp1474Miscellaneous; hypothetical/partial homology. (321 aa)    
Predicted Functional Partners:
RSc1759
3-hydroxyacyl-CoA dehydrogenase; Probable trifunctonal: enoyl-coa hydratase and delta3-cis-delta2-trans-enoyl-coa isomerase and 3-hydroxyacyl-coa dehydrogenase oxidoreductase protein.
 
 0.868
RSc0474
Putative 3-hydroxyacyl-coa dehydrogenase oxidoreductase protein.
  
 0.825
RSp1475
Putative type III effector protein.
       0.752
RSp0641
Probable non ribosomal peptide synthetase protein.
  
 
 0.681
RSc2045
Probable acyl-coa dehydrogenase oxidoreductase protein.
  
     0.633
RSc1366
Probable acyl-coa-binding protein.
   
 0.586
RSc1761
Probable acetyl-coa acetyltransferase protein; Belongs to the thiolase-like superfamily. Thiolase family.
 
 0.556
RSp1120
Putative acyl dehydratase protein.
 
 0.550
RSc1806
Probable polyketide synthase protein.
  
 0.538
paaH1
Probable 3-hydroxybutyryl-coa dehydrogenase oxidoreductase protein.
  
 0.531
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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