STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1482Putative outer membrane transmembrane protein. (215 aa)    
Predicted Functional Partners:
RSp1481
Probable transmembrane protein.
     0.992
motA
Probable chemotaxis (motility protein a) transmembrane.
  
 
 0.972
RSp1483
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
      0.943
RSp1480
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
      0.939
RSp0598
Putative response regulator transcription regulator protein.
  
  
 0.863
fliA
RNA polymerase sigma factor FliA; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor controls the expression of flagella-related genes; Belongs to the sigma-70 factor family. FliA subfamily.
  
  
 0.826
flgC
Probable flagellar basal-body rod protein flgc; Belongs to the flagella basal body rod proteins family.
 
  
 0.821
flgK
Probable flagellar hook-associated protein 1; Belongs to the flagella basal body rod proteins family.
  
  
 0.787
fliD
Probable flagellar hook-associated protein 2 (filament cap protein); Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
  
  
 0.783
cheA
Probable chemotaxis sensor histidine kinase transcription regulator protein.
  
  
 0.774
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.