STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cmcHProbable 3'-hydroxymethylcephem-o-carbamoyltransferase protein. (523 aa)    
Predicted Functional Partners:
RSp1486
Putative biotin carboxylase protein.
 
     0.793
RSp1492
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
 
     0.612
RSp1485
Probable transmembrane protein.
  
    0.592
RSp1491
Putative carbamoyltransferase; protein.
 
    
0.592
RSp1488
Hypothetical protein; Miscellaneous; unknown.
       0.574
RSp1484
Putative hydrolase or acyltransferase (alpha/beta hydrolase superfamily) oxidoreductase protein.
       0.544
ftsK
Probable cell division ftsk transmembrane protein; Essential cell division protein that coordinates cell division and chromosome segregation. The N-terminus is involved in assembly of the cell-division machinery. The C-terminus functions as a DNA motor that moves dsDNA in an ATP-dependent manner towards the dif recombination site, which is located within the replication terminus region. Translocation stops specifically at Xer-dif sites, where FtsK interacts with the Xer recombinase, allowing activation of chromosome unlinking by recombination. FtsK orienting polar sequences (KOPS) guid [...]
      
 0.532
cobB
Probable cobyrinic acid a,c-diamide synthase protein; Catalyzes the ATP-dependent amidation of the two carboxylate groups at positions a and c of cobyrinate, using either L-glutamine or ammonia as the nitrogen source; Belongs to the CobB/CbiA family.
      
 0.531
RSp1489
Hypothetical lipolytic enzyme protein.
       0.504
RSp1422
Putative peptide synthetase protein.
 
   
 0.503
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.