STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1498Probable outer membrane usher signal peptide protein. (786 aa)    
Predicted Functional Partners:
RSp1499
Putative pili assembly chaperone transmembrane protein.
 
 
 0.977
RSp1497
Probable lipoprotein signal peptide.
 
  
 0.952
RSc2694
Putative pili assembly chaperone transmembrane protein.
 
 
 0.947
RSp1500
Probable signal peptide protein.
 
  
 0.906
RSc2695
Probable signal peptide protein.
 
  
 0.799
RSc2696
Probable signal peptide protein.
 
  
 0.799
RSc2692
Probable signal peptide protein.
 
  
 0.796
RSp0244
Probable outer membrane hemin receptor signal peptide protein.
  
     0.557
RSp0177
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.465
RSc1877
Probable aspartyl/asparaginyl beta-hydroxylase transmembrane protein.
  
    0.459
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.