STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1504Conserved hypothetical protein; Miscellaneous; hypothetical/global homology. (100 aa)    
Predicted Functional Partners:
norB
Probable nitric oxide reductase (subunit b) transmembrane protein.
 
   
 0.839
RSp1503
Probable major anaerobically induced outer membrane transmembrane protein; Belongs to the multicopper oxidase family.
 
     0.615
narJ
Putative respiratory nitrate reductase oxidoreductase protein.
     
 0.567
narK2
Probable nitrite/nitrate transporter transmembrane protein.
     
 0.561
RSc3399
Probable transmembrane protein.
 
   
 0.558
narK1
Putative nitrite/nitrate transporter transmembrane protein.
     
 0.553
narI
Probable respiratory nitrate reductase transmembrane protein.
     
 0.549
RSp1501
Probable signal peptide protein.
 
     0.536
nosD
Probable periplasmic copper-binding nosd signal peptide protein.
 
     0.529
nosZ
Probable nitrous-oxide reductase precursor (n(2)or) (n2oreductase). oxidoreductase protein; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; Belongs to the NosZ family.
 
     0.526
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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