Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
RSp1506Probable transcription regulator protein. (240 aa)    
Predicted Functional Partners:
metF
Probable 5,10-methylenetetrahydrofolate reductase oxidoreductase protein; Belongs to the methylenetetrahydrofolate reductase family.
      
 0.817
RSp1508
Probable transmembranee abc transporter protein.
  
  
 0.612
RSp1507
Probable atp-binding abc transporter protein.
  
    0.604
scrA
Probable pts system, sucrose-specific (IIbc component) transmembrane protein.
 
  
 0.603
RSc1078
Probable transcriptional regulatory dna-binding transcription regulator protein.
  
  
 0.573
RSp1282
Probable pts system, fructose-specific eIIa/hpr/ei components protein.
     
 0.537
RSc3062
Probable transcription regulator protein.
  
  
 0.514
RSp1509
Putative periplasmic substrate-binding transmembrane protein.
  
    0.495
RSp1616
Probable transcription regulator transcription regulator protein.
  
   
 0.478
hutC
Probable histidine utilization repressor transcription regulator protein.
  
   
0.469
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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