STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1519Putative sulfate transporter transmembrane protein. (567 aa)    
Predicted Functional Partners:
RSc1810
Probable polyketide synthase protein.
   
 
 0.730
nuoM
Probable transmembrane nadh dehydrogenaseI(chain m) oxidoreductase protein.
  
 
 0.697
petB
Putative cytochrome b subunit transmembrane protein; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis.
    
 
 0.677
RSp1469
Probable tyrosine phosphatase protein.
   
   0.664
tek2
Probable tek-related protein.
    
   0.569
tek
Tek signal peptide protein.
    
   0.569
RSp0641
Probable non ribosomal peptide synthetase protein.
   
 
 0.567
RSc0257
Putative type III effector protein with ankyrin repeats.
    
 
 0.551
RSc0781
Probable ankyrin repeat harboring signal peptide protein.
    
 
 0.551
RSc0974
Probable transmembrane protein.
    
 
 0.551
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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