STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1522Probable transmembrane protein. (883 aa)    
Predicted Functional Partners:
RSp1521
Putative type iv secretory pathway virj component-related protein.
 
  
 0.978
RSc0604
Probable hydrolase oxidoreductase protein; Serine hydrolase involved in the detoxification of formaldehyde.
     
 0.604
RSp0641
Probable non ribosomal peptide synthetase protein.
     
 0.604
msrA
Putative peptide methionine sulfoxide reductase oxidoreductase protein; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
     
 0.576
RSp0411
Putative permease transmembrane protein.
 
   
 0.574
RSc0469
Putative endonuclease/exonuclease/phosphatase protein.
  
  
 0.562
RSc1208
Probable metal-dependent hydrolase protein.
  
  
 0.562
folP
Probable 7,8-dihydropteroate synthase protein; Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8- dihydropteroate (H2Pte), the immediate precursor of folate derivatives.
     
 0.554
hmsF
Putative hemin storage signal peptide protein.
  
  
 0.543
msrB
Probable peptide methionine sulfoxide reductase related protein; Belongs to the MsrB Met sulfoxide reductase family.
     
 0.535
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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