STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1524Putative signal transduction ggdef domain transmembrane protein. (505 aa)    
Predicted Functional Partners:
RSc3387
Probable two-component response regulator with eal domain transcription regulator protein.
 
 0.889
RSp1051
Probable signal transduction protein eal domain.
 
 0.883
RSp1623
Putative response regulator with eal domain protein.
    0.823
RSp1208
Probable signal transduction protein eal-ggdef domains.
    0.812
RSc2515
Putative metal-dependent phosphohydrolase, hd region; protein.
 
 0.786
RSc0592
Putative metal-dependent phosphohydrolase harboring a hd domain protein.
 
 0.741
RSp0281
Putative signal transduction protein ggdef domain.
  
     0.641
RSc0588
Probable signal transduction protein eal-ggdef domains.
 
 
0.632
RSp1203
Probable signal transduction protein ggdef domain.
 
 
0.587
rcsC
Probable capsular synthesis regulatory (two-component sensor kinase and response regulator hybrid) transcription regulator protein.
 
 
 0.549
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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