STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
efe2-oxoglutarate-dependent ethylene/succinate-forming enzyme (ethylene-forming enzyme) (efe) protein; Simultaneously catalyzes two reactions, namely formation of ethylene and of succinate from 2-oxoglutarate. (345 aa)    
Predicted Functional Partners:
acdS
Probable 1-aminocyclopropane-1-carboxylate deaminase (accdeaminase) (accd) protein; Catalyzes a cyclopropane ring-opening reaction, the irreversible conversion of 1-aminocyclopropane-1-carboxylate (ACC) to ammonia and alpha-ketobutyrate. Allows growth on ACC as a nitrogen source; Belongs to the ACC deaminase/D-cysteine desulfhydrase family.
  
   
 0.573
RSp1229
Probable alpha/beta hydrolase; protein.
  
   
 0.524
RSc1806
Probable polyketide synthase protein.
  
 
 
 0.520
RSc0818
Putative endoglucanase c-terminal domain harboring protein.
  
     0.512
RSc2596
Putative amidase related to nicotinamidase; protein.
  
     0.476
RSc0582
Probable avrd-related protein.
      
 0.465
RSc1810
Probable polyketide synthase protein.
  
 
 
 0.454
RSp0641
Probable non ribosomal peptide synthetase protein.
   
 
 0.450
RSp0438
Probable hydrolase protein.
  
     0.438
epsR
Negative regulator of exopolysaccharide production transcription regulator protein.
      
 0.433
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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