STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1530Polyphenol oxidase (laccase) oxidoreductase protein. (717 aa)    
Predicted Functional Partners:
copB
Probable copper resistance protein b.
  
  
 0.718
RSc0337
Polyphenol oxidase with tyrosine hydroxylase activity oxidoreductase protein.
 
   
 0.711
RSc1501
Polyphenol oxidase oxidoreductase protein.
 
   
 0.690
RSc0754
Probable antioxidant (peroxidase) oxidoreductase protein.
      
 0.604
RSc3084
Probable transmembrane protein.
    
   0.550
RSp1367
Putative cytochrome c5 protein.
    
   0.550
RSp0641
Probable non ribosomal peptide synthetase protein.
  
  
 0.524
RSc1806
Probable polyketide synthase protein.
  
   
 0.493
RSc0115
Probable hemagglutinin-related autotransporter protein.
  
     0.443
RSc3403
Probable two-component sensor kinase transcription regulator protein.
  
   0.428
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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