STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1574Putative transcriptional regulator transcription regulator protein; Belongs to the LysR transcriptional regulatory family. (302 aa)    
Predicted Functional Partners:
RSp1575
Probable amino-acid-binding periplasmic (pbp) abc transporter protein.
 
   
 0.902
RSp1576
Probable amino-acid transmembrane abc transporter protein.
 
   
 0.876
speB
Probable agmatinase protein; Belongs to the arginase family.
 
     0.738
RSc0160
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.689
RSc0214
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.676
RSc2497
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.665
RSc2537
Probable transcription regulator transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.662
RSc0804
Probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
  
     0.628
soxA1
Probable sarcosine oxidase (alpha subunit) oxidoreductase protein; Belongs to the GcvT family.
   
  
 0.623
RSc3094
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
      
 0.620
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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