STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1579Putative transcription regulator protein. (252 aa)    
Predicted Functional Partners:
speB
Probable agmatinase protein; Belongs to the arginase family.
     
 0.774
rcsC
Probable capsular synthesis regulatory (two-component sensor kinase and response regulator hybrid) transcription regulator protein.
  
 
 0.723
RSp1208
Probable signal transduction protein eal-ggdef domains.
  
  
 0.686
RSp1576
Probable amino-acid transmembrane abc transporter protein.
       0.642
RSp1577
Probable amino-acid transmembrane abc transporter protein.
       0.642
RSc3207
Putative transcription regulator protein.
      
 0.641
RSp0224
Probable transcription regulator protein.
   
  
 0.641
RSp1575
Probable amino-acid-binding periplasmic (pbp) abc transporter protein.
   
   0.621
RSp0786
Probable cog0332, 3-oxoacyl-[acyl-carrier-protein].
  
     0.611
RSc3160
Probable two component sensor histidine kinase transcription regulator protein.
 
 
 0.464
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.