STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1603Putative calcium-binding ef-hand hnh nuclease protein. (370 aa)    
Predicted Functional Partners:
RSp1604
Putative transmembrane protein.
       0.744
traG
Probable plasmid conjugation trag transmembrane protein.
   
 
 0.687
RSp1605
Hypothetical protein; Miscellaneous; unknown.
       0.606
rnhA
Probable ribonuclease h (rnase h) protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.
     
 0.531
RSp1606
Hypothetical hypothetical transmembrane protein.
       0.507
RSc0474
Putative 3-hydroxyacyl-coa dehydrogenase oxidoreductase protein.
     
 0.476
RSc1759
3-hydroxyacyl-CoA dehydrogenase; Probable trifunctonal: enoyl-coa hydratase and delta3-cis-delta2-trans-enoyl-coa isomerase and 3-hydroxyacyl-coa dehydrogenase oxidoreductase protein.
     
 0.476
RSp1602
Hypothetical protein; Miscellaneous; unknown.
       0.459
RSp1607
Hypothetical protein; Miscellaneous; unknown.
       0.434
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
  
    0.420
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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