STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
uxaAPutative altronate hydrolase (altronic acid hydratase) protein. (519 aa)    
Predicted Functional Partners:
hpaI2
Probable 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase protein; Belongs to the HpcH/HpaI aldolase family.
    0.808
RSp1614
Probable transport transmembrane protein.
  
 0.798
dalD
Putative d-arabinitol 4-dehydrogenase. oxidoreductase protein; Belongs to the mannitol dehydrogenase family.
  
 0.722
nusG
Probable transcription antitermination protein; Participates in transcription elongation, termination and antitermination.
      
 0.720
dgoAa
Putative 2-dehydro-3-deoxyphosphogalactonate aldolase protein.
 
  
 0.615
RSp1616
Probable transcription regulator transcription regulator protein.
 
   
 0.609
pehB
Exo-poly-galacturonosidase signal peptide protein; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.605
ttuC
Probable tartrate dehydrogenase oxidoreductase protein.
       0.534
gabD2
Probable succinate-semialdehyde dehydrogenase oxidoreductase protein; Belongs to the aldehyde dehydrogenase family.
     
 0.484
pehC
Polygalacturonase transmembrane protein; Belongs to the glycosyl hydrolase 28 family.
 
   
 0.456
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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