STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RSp1620Putative surface-exposed adhesin protein. (1309 aa)    
Predicted Functional Partners:
RSp0540
Probable hemagglutinin-related protein.
  
   
 0.949
RSc0104
Putative hemolysin-type calcium-binding protein.
      
 0.814
RSc3030
Hypothetical precursor. signal peptide protein; Protects the bacterial cell from host peptidases.
  
     0.769
RSc3028
Putative signal peptide protein.
  
   
 0.748
RSc0170
Probable transmembrane protein.
  
     0.745
RSc3027
Probable signal peptide protein.
  
   
 0.743
RSc0887
Probable hemagglutinin-related protein.
  
     0.738
RSp0642
Probable non ribosomal peptide synthetase protein.
      
 0.732
RSp1536
Probable hemagglutinin-related signal peptide protein.
  
   
 0.695
RSc3183
Probable hemagglutinin-related signal peptide protein.
  
   
 0.691
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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