STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1620Putative surface-exposed adhesin protein. (1309 aa)    
Predicted Functional Partners:
RSp0540
Probable hemagglutinin-related protein.
 
   
 0.933
RSc3030
Hypothetical precursor. signal peptide protein; Protects the bacterial cell from host peptidases.
  
     0.769
RSc0104
Putative hemolysin-type calcium-binding protein.
     
 0.756
RSp1180
Probable hemagglutinin/hemolysin-related protein.
      
 0.756
RSc0887
Probable hemagglutinin-related protein.
 
   
 0.748
RSc0170
Probable transmembrane protein.
  
     0.745
RSc3028
Putative signal peptide protein.
  
     0.740
RSc3027
Probable signal peptide protein.
  
     0.735
RSp0642
Probable non ribosomal peptide synthetase protein.
      
 0.735
RSp0641
Probable non ribosomal peptide synthetase protein.
     
 0.733
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.