STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RSp1626Putative n-acetyltransferase protein. (163 aa)    
Predicted Functional Partners:
RSp1627
Hypothetical ribbon-helix-helix motif harboring protein.
 
 
   0.978
RSp0641
Probable non ribosomal peptide synthetase protein.
 
    0.467
tISRso16b-2
Isrso16-transposase orfb protein.
       0.433
tISRso16a-2
Probable c-terminus of tisrso16 orfa transposase protein.
       0.433
RSc0432
Putative amp-dependent synthetase or ligase protein.
  
 
 0.427
RSp0367
Putative acyl-coenzyme a synthetases/amp-(fatty) acid ligases and c 3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase.
  
 
 0.427
RSc1697
Conserved hypothetical protein; Miscellaneous; hypothetical/global homology.
  
     0.418
vapC
Putative plasmid stability-like protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.410
RSc0919
Putative deacetylase protein.
 
  
 0.407
RSp0968
Putative lipid carrier protein sterol-binding protein.
  
  
 0.401
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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