STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xylGProbable d-xylose atp-binding abc transporter protein; Part of the ABC transporter complex XylFGH involved in xylose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Xylose importer (TC 3.A.1.2.4) family. (514 aa)    
Predicted Functional Partners:
xylH
Probable xylose transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.997
xylF
Probable d-xylose-binding periplasmic abc transporter protein.
 
 0.992
araH
Probable l-arabinose transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.936
RSc1243
Probable sugar transmembrane abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.933
RSc1015
Probable ribose abc transporter, permease abc transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.926
mocB
Putative rhizopine-binding precursor signal peptide protein.
 
 
 0.891
RSc1017
Probable ribose abc transporter, periplasmic ribose-binding abc transporter protein.
 
 
 0.890
metG1
Probable methionyl-trna synthetase (methionine--trna ligase)(metrs) protein; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
   0.701
dmpC
2-hydroxymuconic semialdehyde dehydrogenase oxidoreductase protein; Belongs to the aldehyde dehydrogenase family.
      
 0.671
araF
Probable l-arabinose-binding periplasmic (pbp) abc transporter protein; Belongs to the bacterial solute-binding protein 2 family.
  
 
 0.580
Your Current Organism:
Ralstonia solanacearum
NCBI taxonomy Id: 267608
Other names: R. solanacearum GMI1000, Ralstonia solanacearum GMI1000, Ralstonia solanacearum str. GMI1000, Ralstonia solanacearum strain GMI1000
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